General Information
-
DRAMP ID
- DRAMP01022
-
Peptide Name
- Cy-AMP1 (Plant defensin)
-
Source
- Cycas revoluta (cycad seeds)
-
Family
- Not found
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Gene
- Not found
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Sequence
- KGAPCAKKPCCGPLGHYKVDCSTIPDYPCCSKYGFCGSGPQYCG
-
Sequence Length
- 44
-
UniProt Entry
- No entry found
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Protein Existence
- Not found
Activity Information
-
Biological Activity
- Antimicrobial, Antibacterial, Anti-Gram+, Anti-Gram-, Antifungal
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Target Organism
-
- Gram-positive bacteria: Clavibacterium michiganensis (IC50=7.3 µg/ml), Curtobacterium flaccumfaciens (IC50=8.9 µg/ml);
- Gram-negative bacteria: Agrobacterium radiobacter (IC50=8.3 µg/ml), Agrobacterium rhizogenes (IC50=8.5 µg/ml), Erwinia carobora (IC50=8.0 µg/ml).
- Fungi: Fusarium oxysporum (IC50=6.0 µg/ml), Geotrichum candidum (IC50=7.4 µg/ml).
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Hemolytic Activity
-
- No hemolysis information or data found in the reference(s) presented in this entry
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Cytotoxicity
-
- Not included yet
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Binding Target
- Lipid-binding
Structure Information
-
Linear/Cyclic
- Not included yet
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N-terminal Modification
- Not included yet
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C-terminal Modification
- Not included yet
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Nonterminal Modifications and Unusual Amino Acids
- Not included yet
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Stereochemistry
- Not included yet
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Structure
- Not found
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Structure Description
- Not found
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Helical Wheel Diagram
-
PDB ID
- None
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Predicted Structure
- There is no predicted structure for DRAMP01022.
Physicochemical Information
-
Formula
- C198H298N52O58S8
Absent Amino Acids
- EMNRW
Common Amino Acids
- C
Mass
- 4591.34
PI
- 8.47
Basic Residues
- 6
Acidic Residues
- 2
Hydrophobic Residues
- 6
Net Charge
- +4
-
Boman Index
- -31.42
Hydrophobicity
- -0.341
Aliphatic Index
- 28.86
Half Life
-
- Mammalian:1.3 hour
- Yeast:3 min
- E.coli:2 min
Extinction Coefficient Cystines
- 6460
Absorbance 280nm
- 150.23
Polar Residues
- 23
DRAMP01022
Comments Information
Function
- Cy-AMP1 has antimicrobial activity against various plant-pathogenic fungi and bacteria.
Literature Information
- ·Literature 1
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Title
- Purification, characterization, and sequencing of antimicrobial peptides, Cy-AMP1, Cy-AMP2, and Cy-AMP3, from the Cycad (Cycas revoluta) seeds.
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Pubmed ID
- 18778743
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Reference
- Peptides. 2008 Dec;29(12):2110-2117.
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Author
- Yokoyama S, Kato K, Koba A, Minami Y, Watanabe K, Yagi F.