General Information
-
DRAMP ID
- DRAMP39074
-
Peptide Name
- XPF-St5
-
Source
- Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
-
Family
- not found
-
Gene
- not found
-
Sequence
- GWLPTFGKILRKAMQLGPKLIQPI
-
Sequence Length
- 24
-
UniProt Entry
- A0A8J1JR09(38-62)
-
Protein Existence
- predicted
-
SMILES
- CC[C@@H](C)[C@H](NC(=O)[C@@H]1CCCN1C(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@@H]1CCCN1C(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCSC)NC(=O)[C@H](C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)CNC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)CN)[C@@H](C)O)[C@H](C)CC)[C@H](C)CC)C(=O)O
Activity Information
-
Biological Activity
- Antimicrobial,Antibacterial,Anti-Gram+,Anti-Gram-,Antifungal,Antiprotozoal
-
Target Organism
-
- [Ref.23935531]protozoon: Trypanosoma brucei (LC₉₅=2–4 μM)
- Gram-positive bacteria:
Target Organism Activity Staphylococcus aureus (MIC=8–16 μM); Micrococcus luteus (MIC=0.5 μM); - - Gram-negative bacteria:
Target Organism Activity Escherichia coli (MIC=2–4 μM); Pseudomonas aeruginosa (MIC=16 μM); - - Fungi:
Target Organism Activity Saccharomyces cerevisiae MIC=8 μM
-
Hemolytic Activity
-
- [Ref.23935531]HC₅₀=64 μM
-
Cytotoxicity
-
- [Ref.23935531]IC₅₀=8 μM on mouse T-lymphocytes
-
Binding Target
- membrane
Structure Information
-
Linear/Cyclic
- Linear
-
N-terminal Modification
- Free
-
C-terminal Modification
- Free
-
Nonterminal Modifications and Unusual Amino Acids
-
Stereochemistry
- L
-
PDB ID
- notfound
-
Predicted Structure
-
- Please click DRAMP39074_predicted_structure.pdb to download.
Physicochemical Information
-
Formula
- C120H197N31O31
Absent Amino Acids
- Cys,Glu,His,Met,G
Common Amino Acids
- Ala,Asp,P
Mass
- 2570.04
PI
- 10
Basic Residues
- 4
Acidic Residues
- 1
Hydrophobic Residues
- 11
Net Charge
- +3
-
Boman Index
- 0
Hydrophobicity
- 0.003
Aliphatic Index
- 109.2
Half Life
-
- Mammalian:30 hours
- Yeast:>20 hour
- E.coli:>10 hour
Extinction Coefficient Cystines
- 5500
Absorbance 280nm
- 2.14
Polar Residues
- 3
DRAMP39074
Comments Information
Literature Information
- ·Literature 1
-
Title
- Origin and functional diversification of an amphibian defense peptide arsenal
-
Pubmed ID
- 23935531
-
Reference
- PLoS Genet. 2013;9(8):e1003662
-
Author
- Roelants K, Fry BG, Ye L, Stijlemans B, Brys L, Kok P, Clynen E, Schoofs L, Cornelis P, Bossuyt F
