General Information
-
DRAMP ID
- DRAMP00565
-
Peptide Name
- Defensin-like protein 116 (Plant defensin)
-
Source
- Arabidopsis thaliana (Mouse-ear cress)
-
Family
- Belongs to the DEFL family
-
Gene
- Not found
-
Sequence
- SDSALGIGIKEDWEVCFSIDPCLTGEGTLGCTKWCRNHINLSLVGYCRTDPEHCCCVAEK
-
Sequence Length
- 60
-
UniProt Entry
- Q3E8I8
-
Protein Existence
- Homology
Activity Information
-
Biological Activity
- Antimicrobial, Antifungal
-
Target Organism
- No MICs found in DRAMP database
-
Hemolytic Activity
-
- No hemolysis information or data found in the reference(s) presented in this entry
-
Cytotoxicity
-
- Not included yet
-
Binding Target
- Not found
Structure Information
-
Linear/Cyclic
- Not included yet
-
N-terminal Modification
- Not included yet
-
C-terminal Modification
- Not included yet
-
Nonterminal Modifications and Unusual Amino Acids
- Not included yet
-
Stereochemistry
- Not included yet
-
Structure
- Not found
-
Structure Description
- Not found
-
Helical Wheel Diagram
-
PDB ID
- None
-
Predicted Structure
- There is no predicted structure for DRAMP00565.
Physicochemical Information
-
Formula
- C280H437N77O90S8
Absent Amino Acids
- MQ
Common Amino Acids
- C
Mass
- 6578.49
PI
- 4.82
Basic Residues
- 7
Acidic Residues
- 9
Hydrophobic Residues
- 17
Net Charge
- -2
-
Boman Index
- -78.5
Hydrophobicity
- -0.072
Aliphatic Index
- 76.33
Half Life
-
- Mammalian:1.9 hour
- Yeast:>20 hour
- E.coli:>10 hour
Extinction Coefficient Cystines
- 12990
Absorbance 280nm
- 220.17
Polar Residues
- 25
DRAMP00565
Comments Information
Function
- Defense response to fungus.
PTM
- Contains four disulfide bonds (By similarity).
Literature Information
- ·Literature 1
-
Title
- Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.
-
Pubmed ID
- 9679202
-
Reference
- DNA Res. 1998 Apr 30;5(2):131-145.
-
Author
- Kaneko T, Kotani H, Nakamura Y, Sato S, Asamizu E, Miyajima N, Tabata S.
- ·Literature 2
-
Title
- Genome organization of more than 300 defensin-like genes in Arabidopsis.
-
Pubmed ID
- 15955924
-
Reference
- Plant Physiol. 2005 Jun;138(2):600-610.
-
Author
- Silverstein KA, Graham MA, Paape TD, VandenBosch KA.
- ·Literature 3
-
Title
- Whole genome sequence comparisons and full-length cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
-
Pubmed ID
- 14993207
-
Reference
- Genome Res. 2004 Mar;14(3):406-413.
-
Author
- Castelli V, Aury JM, Jaillon O, Wincker P, Clepet C, Menard M, Cruaud C, Qu©tier F, Scarpelli C, Schächter V, Temple G, Caboche M, Weissenbach J, Salanoubat M.