Useful Links

Useful Resources

NameDiscriptionLinks
NCBI
(National Center for Biotechnology Information)
The NCBI holds a series of databases relevant to biotechnology and biomedicine. Major databases include GenBank for DNA sequences and PubMed for biomedical literature. http://www.ncbi.nlm.nih.gov/
ExPAsy
(Expert Protein Analysis System)
ExPASy is a bioinformatics resource portal accessing many scientific resources, databases and software tools in different areas of life sciences. http://www.expasy.org/
ClinicalTrials.gov The largest clinical trials database, currently holding registrations from over 144,133 trials from more than 170 countries in the world. http://www.clinicaltrials.gov/
EudraCT
(European Union Drug Regulating Authorities Clinical Trials)
EudraCT is the European Clinical Trials Database of all clinical trials commencing in the European Union from 1 May 2004 onwards. https://www.clinicaltrialsregister.eu/
Lens The Lens is an online patent search facility and knowledge resource, which allows free searching of over 10 million full-text patent documents. https://www.lens.org/

General Databases

NameDiscriptionLinks
UniProtKB/Swiss-Prot UniProtKB/Swiss-Prot is a high-quality, manually annotated, non-redundant protein sequence and annotation database. http://www.uniprot.org/
PDB (Protein Data Bank) PDB is a repository for the 3-D structural data of Biological macromolecules (X-ray or NMR method) http://www.wwpdb.org/
PubMed PubMed is a free database accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics. As of 24 March 2013, PubMed has over 22.6 million citations. http://www.ncbi.nlm.nih.gov/pubmed/

Bioactive Peptide Databases

NameDiscriptionLinks
PepBank A database of peptides based on sequence text mining and public peptide data sources. http://pepbank.mgh.harvard.edu/
APD3
(old version: APD2/APD)
Antimicrobial peptide database, currently containing 3065 Natural AMPs. http://aps.unmc.edu/AP/main.php
CAMP Database of antimicrobial peptides and proteins. http://www.bicnirrh.res.in/
AMPer A database and an dutomated discovery tool for gene encoded antimicrobial peptides. http://www.cnbi2.com/cgi-bin/amp.pl/
DAMPD
(Old: ANTIMIC)
A manually curated database of known and putative antimicrobial peptides. http://apps.sanbi.ac.za/dampd/
BAGEL A genome mining tool for putative bacteriocin gene clusters detection. http://bioinformatics.biol.rug.nl/websoftware/bagel
BACTIBASE BACTIBASE is a data repository of bacteriocin natural antimicrobial peptides http://bactibase.pfba-lab.org
PhytAMP Database of plant antimicrobial peptides and proteins. http://phytamp.pfba-lab-tun.org/main.php
Defensins knowledgebase Database of antimicrobial peptides from the defensins family. http://defensins.bii.a-star.edu.sg/
PenBase PenBase is a curated database devoted to Shrimp Penaeidin. http://penbase.immunaqua.com/
RAPD Database of recombinantly-produced antimicrobial peptides. http://faculty.ist.unomaha.edu/chen/rapd/index.php
DAPD Database of Anuran defense peptides. http://split4.pmfst.hr/dadp/
MilkAMP Database of Dairy-derived AMPs. http://milkampdb.org/
AVPdb Database of Antiviral peptides. http://crdd.osdd.net/servers/avpdb
HIPdb Database of HIV-inhibiting peptides. http://crdd.osdd.net/servers/hipdb
YADAMP Database of Antibacterial peptides. http://www.yadamp.unisa.it
Thiobase Database of Thiopeptides. http://db-mml.sjtu.edu.cn/THIOBASE/
Peptaibols Database of Peptaibols. http://www.cryst.bbk.ac.uk/peptaibol
Cybase Database of Cyclotides. http://www.cybase.org.au/
DBAASP Database of AMPsˈ activity and structure. http://www.biomedicine.org.ge/dbaasp/
Hemolytik Database of Hemolytic activity of AMPs. http://crdd.osdd.net/raghava/hemolytik/

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