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Global Alignment
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Sequence One
Sequence Two
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Scoring Matrix
EBLOSUM30 BLOSUM Matrix in 1/5 Bit Units for Percentage: >= 30
EBLOSUM35 BLOSUM Matrix in 1/4 Bit Units for Percentage: >= 35
EBLOSUM40 BLOSUM Matrix in 1/4 Bit Units for Percentage: >= 40
EBLOSUM45 BLOSUM Matrix in 1/3 Bit Units for Percentage: >= 45
EBLOSUM50 BLOSUM Matrix in 1/3 Bit Units for Percentage: >= 50
EBLOSUM55 BLOSUM Matrix in 1/3 Bit Units for Percentage: >= 55
EBLOSUM60 BLOSUM Matrix in 1/1 Bit Units for Percentage: >= 60
EBLOSUM62 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 62
EBLOSUM62-12 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 62
EBLOSUM65 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 65
EBLOSUM70 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 70
EBLOSUM75 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 75
EBLOSUM80 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 80
EBLOSUM85 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 85
EBLOSUM90 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 90
EBLOSUMN BLOSUM Clustered Scoring Matrix in 1/2 Bit Units for Percentage: >= -2
EPAM10 PAM 10 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM20 PAM 20 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM30 PAM 30 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM40 PAM 40 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM50 PAM 50 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM60 PAM 60 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM70 PAM 70 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM80 PAM 80 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM90 PAM 90 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM100 PAM 100 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM110 PAM 110 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM120 PAM 120 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM130 PAM 130 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM140 PAM 140 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM150 PAM 150 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM160 PAM 160 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM170 PAM 170 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM180 PAM 180 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM190 PAM 190 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM200 PAM 200 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM210 PAM 210 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM220 PAM 220 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM230 PAM 230 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM240 PAM 240 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM250 PAM 250 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM260 PAM 260 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM270 PAM 270 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM280 PAM 280 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM290 PAM 290 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM300 PAM 300 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM310 PAM 310 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM320 PAM 320 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM330 PAM 330 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM340 PAM 340 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM350 PAM 350 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM360 PAM 360 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM370 PAM 370 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM380 PAM 380 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM390 PAM 390 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM400 PAM 400 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM410 PAM 410 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM420 PAM 420 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM430 PAM 430 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM440 PAM 440 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM450 PAM 450 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM460 PAM 460 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM470 PAM 470 substitution matrix, scale = ln(2)/7 = 0.0990210
EPAM480 PAM 480 substitution matrix, scale = ln(2)/7 = 0.0990210
EPAM490 PAM 490 substitution matrix, scale = ln(2)/7 = 0.0990210
EPAM500 PAM 500 substitution matrix, scale = ln(2)/7 = 0.0990210
Submit
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Sequence One
Sequence Two
Or,upload a file
Scoring Matrix
EBLOSUM30 BLOSUM Matrix in 1/5 Bit Units for Percentage: >= 30
EBLOSUM35 BLOSUM Matrix in 1/4 Bit Units for Percentage: >= 35
EBLOSUM40 BLOSUM Matrix in 1/4 Bit Units for Percentage: >= 40
EBLOSUM45 BLOSUM Matrix in 1/3 Bit Units for Percentage: >= 45
EBLOSUM50 BLOSUM Matrix in 1/3 Bit Units for Percentage: >= 50
EBLOSUM55 BLOSUM Matrix in 1/3 Bit Units for Percentage: >= 55
EBLOSUM60 BLOSUM Matrix in 1/1 Bit Units for Percentage: >= 60
EBLOSUM62 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 62
EBLOSUM62-12 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 62
EBLOSUM65 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 65
EBLOSUM70 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 70
EBLOSUM75 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 75
EBLOSUM80 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 80
EBLOSUM85 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 85
EBLOSUM90 BLOSUM Matrix in 1/2 Bit Units for Percentage: >= 90
EBLOSUMN BLOSUM Clustered Scoring Matrix in 1/2 Bit Units for Percentage: >= -2
EPAM10 PAM 10 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM20 PAM 20 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM30 PAM 30 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM40 PAM 40 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM50 PAM 50 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM60 PAM 60 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM70 PAM 70 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM80 PAM 80 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM90 PAM 90 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM100 PAM 100 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM110 PAM 110 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM120 PAM 120 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM130 PAM 130 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM140 PAM 140 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM150 PAM 150 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM160 PAM 160 substitution matrix, scale = ln(2)/2 = 0.346574
EPAM170 PAM 170 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM180 PAM 180 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM190 PAM 190 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM200 PAM 200 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM210 PAM 210 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM220 PAM 220 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM230 PAM 230 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM240 PAM 240 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM250 PAM 250 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM260 PAM 260 substitution matrix, scale = ln(2)/3 = 0.231049
EPAM270 PAM 270 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM280 PAM 280 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM290 PAM 290 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM300 PAM 300 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM310 PAM 310 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM320 PAM 320 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM330 PAM 330 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM340 PAM 340 substitution matrix, scale = ln(2)/4 = 0.173287
EPAM350 PAM 350 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM360 PAM 360 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM370 PAM 370 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM380 PAM 380 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM390 PAM 390 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM400 PAM 400 substitution matrix, scale = ln(2)/5 = 0.138629
EPAM410 PAM 410 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM420 PAM 420 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM430 PAM 430 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM440 PAM 440 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM450 PAM 450 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM460 PAM 460 substitution matrix, scale = ln(2)/6 = 0.115525
EPAM470 PAM 470 substitution matrix, scale = ln(2)/7 = 0.0990210
EPAM480 PAM 480 substitution matrix, scale = ln(2)/7 = 0.0990210
EPAM490 PAM 490 substitution matrix, scale = ln(2)/7 = 0.0990210
EPAM500 PAM 500 substitution matrix, scale = ln(2)/7 = 0.0990210
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Sequences (FASTA)
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Methods
Clustal Omega
Muscle
outformat
Clustal
Pearson/FASTA
MSF
PHYLIP
SELEX
STOCKHOLM
VIENNA
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