General Information

    • DRAMP ID

    • DRAMP00828

    • Peptide Name

    • Cycloviolacin-O24 (Plant defensin)

    • Source

    • Viola odorata (Sweet violet)

    • Family

    • Belongs to the cyclotide family. Bracelet subfamily.

    • Gene

    • Not found

    • Sequence

    • GLPTCGETCFGGTCNTPGCTCDPWPVCTHN

    • Sequence Length

    • 30

    • Protein Existence

    • Protein level

Activity Information

    • Biological Activity

    • Antiviral,Insecticidal

    • Target Organism

      • [Ref.18008336]Virus:HIV:inhibition the cytopathic effects of HIV-1 infection in cultured human T-lymphoblast (CEM-SS) cells(EC50=308 nM).

    • Hemolytic Activity

      • [Ref:16872274] It has 75% hemolytic activity at 25.0 μM against human type A red blood cells.

    • Cytotoxicity

      • [Ref.18008336]CEM-SS cells:IC50=6170 nM.

    • Binding Target

    • Not found

Structure Information

    • Linear/Cyclic

    • Cyclic

    • N-terminal Modification

    • Cyclization (N termini to C termini)

    • C-terminal Modification

    • Cyclization (N termini to C termini)

    • Nonterminal Modifications and Unusual Amino Acids

    • Disulfide bonds between Cys5 and Cys19; Cys9 and Cys21; Cys14 and Cys27.

    • Stereochemistry

    • L

    • Structure

    • Bridge

    • Structure Description

    • Not found

    • Helical Wheel Diagram

    • DRAMP00828 helical wheel diagram

    • PDB ID

    • None

    • Predicted Structure

    • There is no predicted structure for DRAMP00828.

Physicochemical Information

    • Formula

    • C126H187N35O43S6

    • Absent Amino Acids

    • AIKMQRSY

    • Common Amino Acids

    • CT

    • Mass

    • 3072.44

    • PI

    • 4.35

    • Basic Residues

    • 1

    • Acidic Residues

    • 2

    • Hydrophobic Residues

    • 4

    • Net Charge

    • -1

    • Boman Index

    • -22.24

    • Hydrophobicity

    • -0.163

    • Aliphatic Index

    • 22.67

    • Half Life

      • Mammalian:30 hour
      • Yeast:>20 hour
      • E.coli:>10 hour

    • Extinction Coefficient Cystines

    • 5875

    • Absorbance 280nm

    • 202.59

    • Polar Residues

    • 19

DRAMP00828

DRAMP00828 chydropathy plot

Comments Information

    • Function

    • Probably participates in a plant defense mechanism. Has hemolytic activity.

    • PTM

    • This is a cyclic peptide which may contain three disulfide bonds 5-19; 9-21; 14-27.

Literature Information

  • ·Literature 1

    • Title

    • A novel suite of cyclotides from Viola odorata: sequence variation and the implications for structure, function and stability.

    • Reference

    • Biochem J. 2006 Nov 15;400(1):1-12.

    • Author

    • Ireland DC, Colgrave ML, Craik DJ.
  • ·Literature 2

    • Title

    • Cyclotides as natural anti-HIV agents.

    • Reference

    • Biopolymers. 2008;90(1):51-60.

    • Author

    • Ireland DC, Wang CK, Wilson JA, Gustafson KR, Craik DJ.