General Information
-
DRAMP ID
- DRAMP01419
-
Peptide Name
- Nigrocin-2GRc (Frogs, amphibians, animals)
-
Source
- Rana grahami (Asian frog)
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Family
- Not found
-
Gene
- Not found
-
Sequence
- GLLSGILGAGKNIVCGLSGLC
-
Sequence Length
- 21
-
UniProt Entry
- No entry found
-
Protein Existence
- Not found
Activity Information
-
Biological Activity
- Antimicrobial, Antibacterial, Anti-Gram-
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Target Organism
-
- [Ref.16621155]Gram-negative bacterium: Escherichia coli (MIC=50 µM).
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Hemolytic Activity
-
- [Ref:16621155] LC50>500 μM against human erythrocytes
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Cytotoxicity
- No cytotoxicity information found in the reference(s) presented
-
Binding Target
- Not found
Structure Information
-
Linear/Cyclic
- Cyclic
-
N-terminal Modification
- Free
-
C-terminal Modification
- Cyclization (Cys15 and Cys21)
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Nonterminal Modifications and Unusual Amino Acids
- Disulfide bond between Cys15 and Cys21.
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Stereochemistry
- L
-
Structure
- Not found
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Structure Description
- Not found
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Helical Wheel Diagram
-
PDB ID
- None
-
Predicted Structure
- Please click DRAMP01419_predicted_structure.pdb to download.
Physicochemical Information
-
Formula
- C84H149N23O25S2
Absent Amino Acids
- DEFHMPQRTWY
Common Amino Acids
- G
Mass
- 1945.37
PI
- 8.06
Basic Residues
- 1
Acidic Residues
- 0
Hydrophobic Residues
- 9
Net Charge
- +1
-
Boman Index
- 29.5
Hydrophobicity
- 1.314
Aliphatic Index
- 148.57
Half Life
-
- Mammalian:30 hour
- Yeast:>20 hour
- E.coli:>10 hour
Extinction Coefficient Cystines
- 125
Absorbance 280nm
- 6.25
Polar Residues
- 11
DRAMP01419
Comments Information
Function
- Has antibacterial against Gram-negative bacterium E. coli. Also has a weak hemolytic activity against human erythrocytes.
Literature Information
- ·Literature 1
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Title
- Antimicrobial peptides from diverse families isolated from the skin of the Asian frog, Rana grahami.
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Pubmed ID
- 16621155
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Reference
- Peptides. 2006 Sep;27(9):2111-2117.
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Author
- Conlon JM, Al-Ghaferi N, Abraham B, Jiansheng H, Cosette P, Leprince J, Jouenne T, Vaudry H.