General Information

    • DRAMP ID

    • DRAMP02342

    • Peptide Name

    • Salmocidin-IIb (fish, chordates, animals)

    • Source

    • Oncorhynchus mykiss (Rainbow trout)

    • Family

    • Not found

    • Gene

    • Not found

    • Sequence

    • AGFVLKGYTKTSQ

    • Sequence Length

    • 13

    • Protein Existence

    • Protein level

Activity Information

    • Biological Activity

    • Antimicrobial, Antibacterial

    • Target Organism

    • No MICs found in DRAMP database

    • Hemolytic Activity

      • No hemolysis information or data found in the reference(s) presented in this entry

    • Cytotoxicity

      • Not included yet

    • Binding Target

    • Not found

Structure Information

    • Linear/Cyclic

    • Not included yet

    • N-terminal Modification

    • Not included yet

    • C-terminal Modification

    • Not included yet

    • Nonterminal Modifications and Unusual Amino Acids

    • Not included yet

    • Stereochemistry

    • Not included yet

    • Structure

    • Not found

    • Structure Description

    • Not found

    • Helical Wheel Diagram

    • DRAMP02342 helical wheel diagram

    • PDB ID

    • None

    • Predicted Structure

    • There is no predicted structure for DRAMP02342.

Physicochemical Information

    • Formula

    • C64H102N16O19

    • Absent Amino Acids

    • CDEHIMNPRW

    • Common Amino Acids

    • GKT

    • Mass

    • 1399.61

    • PI

    • 9.7

    • Basic Residues

    • 2

    • Acidic Residues

    • 0

    • Hydrophobic Residues

    • 4

    • Net Charge

    • +2

    • Boman Index

    • -9.69

    • Hydrophobicity

    • -0.231

    • Aliphatic Index

    • 60

    • Half Life

      • Mammalian:4.4 hour
      • Yeast:>20 hour
      • E.coli:>10 hour

    • Extinction Coefficient Cystines

    • 1490

    • Absorbance 280nm

    • 124.17

    • Polar Residues

    • 6

DRAMP02342

Comments Information

    • Comment

    • No comments found on DRAMP database

Literature Information

  • ·Literature 1

    • Title

    • Purification and partial characterization of antibacterial peptides from rainbow trout, Oncorhynchus mykiss.

    • Reference

    • Submitted DEC-1999 to the SWISS-PROT data bank.

    • Author

    • Henry MA, Secombes CJ.