General Information
-
DRAMP ID
- DRAMP21627
-
Peptide Name
- E2EM15W
-
Source
- Synthetic construct
-
Family
- Not found
-
Gene
- Not found
-
Sequence
- TLKQFAKGVGKWLVK
-
Sequence Length
- 15
-
UniProt Entry
- No entry found
-
Protein Existence
- Synthetic form
Activity Information
-
Biological Activity
- Antimicrobial, Antibacterial, Anti-Gram+, Anti-Gram-
-
Target Organism
-
- [Ref.24211019] Gram-positive bacteria: Bacillus subtilis (MIC = 200 μg/mL), Staphylococcus aureus (MIC = 100 μg/mL), Staphylococcus epidermis (MIC > 200 μg/mL);
- Gram-negative bacteria: Escherichia coli (MIC = 200 μg/mL), Shigella dysentariae (MIC > 200 μg/mL), Salmonella typhimurium (MIC > 200 μg/mL), Klebsiella pneumonia (MIC > 200 μg/mL), Proteus mirabilis (MIC > 200 μg/mL), Pseudomonas aeuginose (MIC > 200 μg/mL).
-
Hemolytic Activity
-
- [Ref.24211019] No hemolytic activity information found.
-
Cytotoxicity
- No cytotoxicity information found in the reference(s) presented
-
Binding Target
- Not found
Structure Information
-
Linear/Cyclic
- Linear
-
N-terminal Modification
- Acetylation
-
C-terminal Modification
- Amidation
-
Nonterminal Modifications and Unusual Amino Acids
- None
-
Stereochemistry
- L
-
Structure
- Random coil coformation with 4% helical content in a 25 mM potassium phosphate buffer solution at 20 ℃.
-
Structure Description
- Circular dichroism also revealed that E2EM15W is even less structured under the same conditions, displaying a helical content of 4%; it is well established that the shorter a peptide is, the more difficult it is to form an α-helical conformation.
-
Helical Wheel Diagram
-
PDB ID
- None
-
Predicted Structure
- There is no predicted structure for DRAMP21627.
Physicochemical Information
-
Formula
- C₈₂H₁₃₅N₂₁O₁₈
Absent Amino Acids
- CDEHIMNPRSY
Common Amino Acids
- K
Mass
- 1703.1
PI
- 10.48
Basic Residues
- 4
Acidic Residues
- 0
Hydrophobic Residues
- 7
Net Charge
- +4
-
Boman Index
- -339
Hydrophobicity
- -0.06
Aliphatic Index
- 97.33
Half Life
-
- Mammalian:7.2 hour
- Yeast:>20 hour
- E.coli:>10 hour
Extinction Coefficient Cystines
- 5500
Absorbance 280nm
- 392.86
Polar Residues
- 3
DRAMP21627
Comments Information
Function
- Antibacterial activity against Gram-positive bacteria. Antibacterial activity against Gram-negative bacteria is not noteable under 200 μg/mL.
Literature Information
- ·Literature 1
-
Title
- Truncated and constrained helical analogs of antimicrobial esculentin-2EM
-
Pubmed ID
- 24211019
-
Reference
- Bioorg Med Chem Lett. 2013 Dec 15;23(24):6717-20. doi: 10.1016/j.bmcl.2013.10.031. Epub 2013 Oct 26.
-
Author
- Thanh Kim Pham, Do-Hee Kim, Bong-Jin Lee, Young-Woo Kim